Publications

Publications

The Biomolecular Discovery and Design Research Centre undertakes research which sets out to discover new ways to cure disease, produce better food and adapt to environmental change. Find out more about our researchers’ publications below.

Nicki Packer

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Ashwood, C., Abrahams, J. L., Nevalainen, H., & Packer, N.H. 2017. Enhancing structural characterisation of glucuronidated O-linked glycans using negative mode ion trap higher energy collision-induced dissociation mass spectrometry. Rapid Communications in Mass Spectrometry 31: 851-858. DOI: 10.1002/rcm.7851

Campbell, M. P., Peterson, R. A., Gasteiger, E., Mariethoz, J., Lisacek, F., & Packer, N.H. 2017. Navigating the glycome space and connecting the glycoproteome. Methods in Molecular Biology 1558: 139-158. DOI: 10.1007/978-1-4939-6783-4_7

Akune, Y., Lin, C.-H., Abrahams, J.L., Zhang, J., Packer, N.H., Aoki-Kinoshita, K.F., Campbell, M.P. 2016. Comprehensive analysis of the N-glycan biosynthetic pathway using bioinformatics to generate UniCorn: A theoretical N-glycan structure database. Carbohydrate Research 431: 56-63. DOI: 10.1016/j.carres.2016.05.012

Campbell, M.P., Packer, N.H. 2016. UniCarbKB: New database features for integrating glycan structure abundance, compositional glycoproteomics data, and disease associations. Biochimica et Biophysica Acta - General Subjects. Article in Press.  DOI: 10.1016/j.bbagen.2016.02.016

Hesselager MO, Everest-Dass AV, Thaysen-Andersen M, Bendixen E, Packer N.H. 2016. FUT1 genetic variants impact protein glycosylation of porcine intestinal mucosa. Glycobiology 26(7): 607-622. DOI: 10.1093/glycob/cww009

Ito, H., Kaji, H., Togayachi, A., Azadi, P., Ishihara, M., Geyer, R., Galuska, C., Geyer, H., Kakehi, K., Kinoshita, M., Karlsson, N.G., Jin, C., Kato, K., Yagi, H., Kondo, S., Kawasaki, N., Hashii, N., Kolarich, D., Stavenhagen, K., Packer, N.H., Thaysen-Andersen, M.,  Nakano, M., Taniguchi, N., Kurimoto, A., Wada, Y., Tajiri, M., Yang, P., Cao, W., Li, H., Rudd, P.M., Narimatsu, H. 2016. Comparison of analytical methods for profiling N- and O-linked glycans from cultured cell lines: HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study. Glycoconjugate Journal 33 (3):405-415  DOI: 10.1007/s10719-015-9625-3

Kamath, K.S., Pascovici, D., Penesyan, A., Goel, A., Venkatakrishnan, V., Paulsen, I.T., Packer, N.H., Molloy, M.P. 2016. Pseudomonas aeruginosa Cell Membrane Protein Expression from Phenotypically Diverse Cystic Fibrosis Isolates Demonstrates Host-Specific Adaptations. Journal of Proteome Research 15 (7): 2152-2163.   DOI: 10.1021/acs.jproteome.6b00058

Kautto, L., Nguyen-Khuong, T., Everest-Dass, A., Leong, A., Zhao, Z., Willcox, M.D.P., Packer, N.H., & Peterson, R. 2016. Glycan involvement in the adhesion of Pseudomonas aeruginosa to tears. Experimental Eye Research, 145, pp. 278-288.  DOI: 10.1016/j.exer.2016.01.013

Loke, I., Kolarich, D., Packer, N.H., & Thaysen-Andersen, M. 2016. Emerging roles of protein mannosylation in inflammation and infection. Molecular Aspects of Medicine. 2016 Apr 13. pii: S0098-2997(16)30005-X. doi: 10.1016/j.mam.2016.04.004.

Moh, E.S, Lin, C.H, Thaysen-Andersen M, & Packer N.H. 2016. Site-Specific N-Glycosylation of Recombinant Pentameric and Hexameric Human IgM. Journal of the American Society of Mass Spectrometry. 27:1143-55. doi: 10.1007/s13361-016-1378-0.

Ian Paulsen

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Gillings, M.R., Paulsen, I.T., & Tetu, S.G. 2017. Genomics and the evolution of antibiotic resistance. Annals of the New York Academy of Sciences, 1388: 92-107. DOI: 10.1111/nyas.13268

Keseler, I. M., Mackie, A., Santos-Zavaleta, A., Billington, R., Bonavides-Martínez, C., Caspi, R., ... Paulsen, I.T., & Karp, P.D. 2017. The EcoCyc database: reflecting new knowledge about Escherichia coli K-12. Nucleic Acids Research, 45(D1), D543-D550. DOI: 10.1093/nar/gkw1003

Hassan, K. A., Fagerlund, A., Elbourne, L. D. H., Vörös, A., Kroeger, J. K., Simm, R., ... Paulsen, I.T. & Kolstø, A. B. 2017. The putative drug efflux systems of the Bacillus cereus group. PLoS ONE, 12(5), [e0176188]. DOI: 10.1371/journal.pone.0176188

Li L, Hassan KA, Brown MH, Paulsen I.T. 2016. Rapid multiplexed phenotypic screening identifies drug resistance functions for three novel efflux pumps in Acinetobacter baumannii. Journal of Antimicrobial Chemotherapy 71(5):1223-32. doi: 10.1093/jac/dkv460. Epub 2016 Jan 31.

Lim, C.K., Penesyan, A., Hassan, K.A., Loper, J.E., Paulsen, I.T. 2016. Disruption of transporters affiliated with enantio-pyochelin biosynthesis gene cluster of Pseudomonas protegens Pf-5 has pleiotropic effects. PLoS ONE 11(7) Article number e0159884 DOI: 10.1371/journal.pone.0159884

Varkey, D., Mazard, S., Ostrowski, M., Tetu, S.G., Haynes, P., Paulsen, I.T. 2016. Effects of low temperature on tropical and temperate isolates of marine Synechococcus. ISME Journal, 10(5):1252-63. doi: 10.1038/ismej.2015.179.

Williams, T.C., Pretorius, I.S., Paulsen, I.T.  2016. Synthetic Evolution of Metabolic Productivity Using Biosensors. Trends in Biotechnology 34 (5), pp. 371-381.  DOI: 10.1016/j.tibtech.2016.02.002

Paul Haynes

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Cramer, G. R., Hopper, D. W., Quilici, D. R., Woolsey, R. J., Cushman, J. C., Vincent, D., Van Sluyter, S. C., George, I., Haynes, P.A. 2017. Early and late responses of grapevine (Vitis vinifera L.) to water deficit: a proteomics perspective. Acta Horticulturae 1157: 263-272. DOI: 10.17660/ActaHortic.2017.1157.37

Mirzaei, M., Pascovici, D., Wu, J. X., Chick, J., Wu, Y., Cooke, B., ... Haynes, P.A & Molloy, M.P. 2017. TMT one-stop shop: From reliable sample preparation to computational analysis platform. In S. Keerthikumar, & S. Mathivanan (Eds.), Proteome Bioinformatics: Methods in Molecular Biology Vol. 1549, pp. 45-66. New York: Humana Press Inc. DOI: 10.1007/978-1-4939-6740-7_5

Emery, S.J., Mirzaei, M., Vuong, D., Pascovici, D., Chick, J.M., Lacey, E., Haynes, P.A. 2016. Induction of virulence factors in Giardia duodenalis independent of host attachment.  Scientific Reports, 6, art. no. 20765. DOI: 10.1038/srep20765

Franklin, J.L., Mirzaei, M., Wearne, T.A., Homewood, J., Goodchild, A.K., Haynes, P.A., Cornish, J.L. 2016. Quantitative proteomic analysis of the orbital frontal cortex in rats following extended exposure to caffeine reveals extensive changes to protein expression: Implications for neurological disease. Journal of Proteome Research 15 (5): 1455-1471.   DOI: 10.1021/acs.jproteome.5b01043

Franklin, J.L., Mirzaei, M., Wearne, T.A., Sauer, M.K., Homewood, J., Goodchild, A.K., Haynes, P.A., Cornish, J.L. 2016. Quantitative shotgun proteomics reveals extensive changes to the proteome of the orbitofrontal cortex in rats that are hyperactive following withdrawal from a high sugar diet.  Proteomics, 16 (4), pp. 657-673. DOI: 10.1002/pmic.201500126

Mousavi SA, Pouya FM, Ghaffari MR, Mirzaei M, Ghaffari A, Alikhani M, Ghareyazie M, Komatsu S, Haynes PA, Salekdeh GH. 2016. PlantPReS: A database for plant proteome response to stress. Journal of Proteomics. 2016 Mar 3. pii: S1874-3919(16)30063-X. doi: 10.1016/j.jprot.2016.03.009.

Wu, Y., Mirzaei, M., Pascovici, D., Chick, J.M., Atwell, B.J., Haynes, P.A. 2016. Quantitative proteomic analysis of two different rice varieties reveals that drought tolerance is correlated with reduced abundance of photosynthetic machinery and increased abundance of ClpD1 protease. Journal of Proteomics (in press) DOI: 10.1016/j.jprot.2016.05.014

Mark Molloy

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Bjelosevic, S., Pascovici, D., Ping, H., Karlaftis, V., Zaw, T., Song, X., Molloy, M.P., Monagle, P. & Ignjatovic, V. 2017. Quantitative age-specific variability of plasma proteins in healthy neonates, children and adults. Molecular and Cellular Proteomics, 16: 924-935. DOI: 10.1074/mcp.M116.066720

Krisp, C., & Molloy, M.P. 2017. SWATH mass spectrometry for proteomics of non-depleted plasma. In Methods in Molecular Biology 1619: 373-383. DOI: 10.1007/978-1-4939-7057-5_25

Simonian, M., Loo, R. R.O., Rannulu, N., Loo, J.A., Molloy, M.P., & Stoodley, M.A. 2017. Identification of protein targets in cerebral endothelial cells for brain arteriovenous malformation (AVMs) molecular therapies. Clinical Proteomics, 14(1), [14]. DOI: 10.1186/s12014-017-9151-3

Succar, P., Medynskyj, M., Breen, E.J., Batterham, T., Molloy, M.P., Herbert, B.R.  2016. Priming Adipose-Derived Mesenchymal Stem Cells with Hyaluronan Alters Growth Kinetics and Increases Attachment to Articular Cartilage (2016) Stem Cells International, 2016, art. no. 9364213. DOI: 10.1155/2016/9364213

Williams, K.L., Topp, S., Yang, S., Smith, B., Fifita, J.A., Warraich, S.T., Zhang, K.Y., Farrawell, N., Vance, C., Hu, X., Chesi, A., Leblond, C.S., Lee, A., Rayner, S.L., Sundaramoorthy, V., Dobson-Stone, C., Molloy, M.P., Van Blitterswijk, M., Dickson, D.W., Petersen, R.C., Graff-Radford, N.R., Boeve, B.F., Murray, M.E., Pottier, C., Don, E., Winnick, C., McCann, E.P., Hogan, A., Daoud, H., Levert, A., Dion, P.A., Mitsui, J., Ishiura, H., Takahashi, Y., Goto, J., Kost, J., Gellera, C., Gkazi, A.S., Miller, J., Stockton, J., Brooks, W.S., Boundy, K., Polak, M., Muñoz-Blanco, J.L., Esteban-Pérez, J., Rábano, A., Hardiman, O., Morrison, K.E., Ticozzi, N., Silani, V., De Belleroche, J., Glass, J.D., Kwok, J.B.J., Guillemin, G.J., Chung, R.S., Tsuji, S., Brown, R.H., Jr, García-Redondo, A., Rademakers, R., Landers, J.E., Gitler, A.D., Rouleau, G.A., Cole, N.J., Yerbury, J.J., Atkin, J.D., Shaw, C.E., Nicholson, G.A., Blair, I.P. 2016. CCNF mutations in amyotrophic lateral sclerosis and frontotemporal dementia. Nature Communications 7 Article number 11253. DOI: 10.1038/ncomms11253

Wu, J.X., Song, X., Pascovici, D., Zaw, T., Care, N., Krisp, C., Molloy, M.P. 2016. SWATH mass spectrometry performance using extended peptide MS/MS assay libraries. Molecular and Cellular Proteomics 15 (7): 2501-2514.   DOI: 10.1074/mcp.M115.055558

Helena Nevalainen

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Ashwood, C., Abrahams, J. L., Nevalainen, H., & Packer, N.H. 2017. Enhancing structural characterisation of glucuronidated O-linked glycans using negative mode ion trap higher energy collision-induced dissociation mass spectrometry. Rapid Communications in Mass Spectrometry 31: 851-858. DOI: 10.1002/rcm.7851

Chen, S. C. A., Patel, S., Meyer, W., Chapman, B., Yu, H., Byth, K., Middleton, P. G., Nevalainen, H. & Sorrell, T. C. 2017. Pseudomonas aeruginosa Inhibits the Growth of Scedosporium and Lomentosporain vitro. Mycopathologia, 1-11. DOI: 10.1007/s11046-017-0140-x

Han, Z., Kautto, L., & Nevalainen, H. 2017. Secretion of proteases by an opportunistic fungal pathogen Scedosporium aurantiacum. PLoS ONE, 12: 1-19. [e0169403]. DOI: 10.1371/journal.pone.0169403

Lategan, M.J., Klare, W., Kidd, S., Hose, G.C., Nevalainen, H. 2016. The unicellular fungal tool RhoTox for risk assessments in groundwater systems. Ecotoxicology and Environmental Safety 132: 18-25.   DOI: 10.1016/j.ecoenv.2016.05.019

Nykänen, M., Birch, D., Peterson, R., Yu, H., Kautto, L., Gryshyna, A., Te’o, J., Nevalainen, H. 2016. Ultrastructural features of the early secretory pathway in Trichoderma reesei. Current Genetics 62(2): 455-465.   DOI: 10.1007/s00294-015-0555-1

Sun, A., Peterson, R., Te'o, J., Nevalainen, H. 2016. Expression of the mammalian peptide hormone obestatin in Trichoderma reesei.  New Biotechnology, 33 (1), pp. 99-106.  DOI: 10.1016/j.nbt.2015.08.004

Morten Thaysen-Andersen

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Hare, N.J., Lee, L.Y., Loke, I., Britton, W.J., Saunders, B.M., & Thaysen-Andersen, M. 2017. Mycobacterium tuberculosis infection manipulates the glycosylation machinery and the N-glycoproteome of human macrophages and their microparticles. Journal of Proteome Research, 16: 247-263. DOI:10.1021/acs.jproteome.6b00685

Loke, I., Ostergaard, O., Heegaard, N.H.H., Packer, N.H., & Thaysen-Andersen, M. 2017. Paucimannose-rich N-glycosylation of spatiotemporally regulated human neutrophil elastase modulates its immune Functions. Molecular & Cellular Proteomics 16: 1507-1527. DOI:10.1074/mcp.M116.066746

Lee, L.Y., Moh, E.S. X., Parker, B.L., Bern, M., Packer, N.H., & Thaysen-Andersen, M. 2016. Toward automated N-glycopeptide identification in glycoproteomics. Journal of Proteome Research, 15: 3904-3915. DOI: 10.1021/acs.jproteome.6b00438

Moh, E. S. X., Lin, C. H., Thaysen-Andersen, M., & Packer, N.H. 2016. Site-specific N-glycosylation of recombinant pentameric and hexameric human IgM. Journal of the American Society for Mass Spectrometry, 27: 1143-1155. DOI: 10.1007/s13361-016-1378-0

Sumer-Bayraktar, Z., Grant, O. C., Venkatakrishnan, V., Woods, R. J., Packer, N.H., & Thaysen-Andersen, M. 2016. Asn347 glycosylation of corticosteroid-binding globulin fine-tunes the host immune response by modulating proteolysis by Pseudomonas aeruginosa and neutrophil elstase. Journal of Biological Chemistry. 291: 17727-17742. DOI: 10.1074/jbc.M116.735258

Thaysen-Andersen, M., Packer, N.H., & Schulz, B.L. 2016. Maturing glycoproteomics technologies provide unique structural insights into the N-glycoproteome and its regulation in health and disease. Molecular and Cellular Proteomics, 15: 1773-1790. DOI: 10.1074/mcp.O115.057638

Sasha Tetu

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Gillings, M.R., Paulsen, I. T., & Tetu, S. G. 2017. Genomics and the evolution of antibiotic resistance. Annals of the New York Academy of Sciences, 1388: 92-107. DOI: 10.1111/nyas.13268

Elbourne, L. D. H., Tetu, S.G., Hassan, K. A., & Paulsen, I.T. 2017. TransportDB 2.0: a database for exploring membrane transporters in sequenced genomes from all domains of life. Nucleic Acids Research, 45(D1), D320-D324. DOI: 10.1093/nar/gkw1068

Delport, T.C., Power, M.L., Harcourt, R.G., Webster, K.N., Tetu, S.G. 2016. Colony location and captivity influence the gut microbial community composition of the Australian sea lion (Neophoca cinerea).  Applied and Environmental Microbiology 82: 3440-3449. DOI: 10.1128/AEM.00192-16

Varkey, D., Mazard, S., Ostrowski, M., Tetu, S.G., Haynes, P., & Paulsen, I.T. 2016. Effects of low temperature on tropical and temperate isolates of marine Synechococcus. ISME Journal, 10: 1252-1263. DOI: 10.1038/ismej.2015.179

Vick, S.H.W., Tetu, S.G., Sherwood, N., Pinetown, K., Sestak, S., Vallotton, P., ... Paulsen, I.T. 2016. Revealing colonisation and biofilm formation of an adherent coal seam associated microbial community on a coal surface. International Journal of Coal Geology, 160-161, 42-50. DOI: 10.1016/j.coal.2016.04.012

Brian Atwell

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Srikanta Dani, K.G., Marino, G., Taiti, C., Mancuso, S., Atwell, B.J., Loreto, F., & Centritto, M. 2017. De novo post-illumination monoterpene burst in Quercus ilex (holm oak). Planta, 245: 459-465. DOI: 10.1007/s00425-016-2636-x

Mirzaei, M., Wu, Y., Worden, P., Jerkovic, A., & Atwell, B.J. 2016. How proteomics contributes to our understanding of drought tolerance. In G. H. Salekdeh (Ed.), Agricultural Proteomics Volume 2: Environmental Stresses (pp. 129-153). Switzerland: Springer International Publishing. DOI: 10.1007/978-3-319-43278-6_6

Scafaro, A.P., Gallé, A., Van Rie, J., Carmo-Silva, E., Salvucci, M.E., Atwell, B.J.  2016. Heat tolerance in a wild Oryza species is attributed to maintenance of Rubisco activation by a thermally stable Rubisco activase ortholo. New Phytologist 211:899-911. DOI: 10.1111/nph.13963

Wu, Y., Mirzaei, M., Pascovici, D., Chick, J. M., Atwell, B.J., & Haynes, P.A. 2016. Quantitative proteomic analysis of two different rice varieties reveals that drought tolerance is correlated with reduced abundance of photosynthetic machinery and increased abundance of ClpD1 protease. Journal of Proteomics, 143: 73-82. DOI: 10.1016/j.jprot.2016.05.014

Peter Bergquist

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Care, A., Petroll, K., Gibson, E.S.Y., Bergquist, P.L., & Sunna, A. 2017. Solid-binding peptides for immobilisation of thermostable enzymes to hydrolyse biomass polysaccharides. Biotechnology for Biofuels, 10: 29. DOI 10.1186/s13068-017-0715-2

Sayyadi, N., Care, A., Connally, R.E., Try, A.C., Bergquist, P.L., & Sunna, A. 2016. A novel universal detection agent for time-gated luminescence bioimaging. Scientific Reports, 6: 1-9.DOI 10.1038/srep27564

Care, A., Bergquist, P.L., & Sunna, A. 2015. Solid-binding peptides: Smart tools for nanobiotechnology. Trends in Biotechnology, 33: 259-268. DOI: 10.1016/j.tibtech.2015.02.005

Louise Brown

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Bradac, C., Say, J.M., Rastogi, I.D., Cordina, N.M., Volz, T., Brown, L.J. 2016. Nano-assembly of nanodiamonds by conjugation to actin filaments. Journal of Biophotonics 9 (3): 296-304.  DOI: 10.1002/jbio.201500167

Hare, J.E., Goodchild, S.C., Breit, S.N., Curmi, P.M.G., Brown, L.J. 2016. Interaction of Human Chloride Intracellular Channel Protein 1 (CLIC1) with Lipid Bilayers: A Fluorescence Study. Biochemistry 55 (27): 3825-3833.   DOI: 10.1021/acs.biochem.6b00080

Reineck, P., Francis, A., Orth, A., Lau, D.W.M., Nixon-Luke, R.D.V., Rastogi, I.D., Razali, W.A.W., Cordina, N.M., Parker, L.M., Sreenivasan, V.K.A., Brown, L.J. & Gibson, B.C. 2016. Brightness and photostability of emerging red and near-IR fluorescent nanomaterials for bioimaging. Advanced Optical Materials, 4: 1549-1557. DOI: 10.1002/adom.201600212

Salao, K., Jiang, L., Li, H., Tsai, V.W.-W., Husaini, Y., Curmi, P.M.G., Brown, L.J., Brown, D.A., Breit, S.N. 2016. CLIC1 regulates dendritic cell antigen processing and presentation by modulating phagosome acidification and proteolysis. Biology Open 5 (5): 620-630. DOI: 10.1242/bio.018119

Roger Chung

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Goozee, K., Chatterjee, P., James, I., Shen, K., Sohrabi, H. R., Asih, P. R., Dave, P., Ball, B., Manyan, C., Taddei, K., Chung, R., Garg, M.L. & Martins, R.N. 2017. Alterations in erythrocyte fatty acid composition in preclinical Alzheimer's disease. Scientific Reports, 7(1), [751]. DOI: 10.1038/s41598-017-00751-2

Don, E. K., Formella, I., Badrock, A. P., Hall, T. E., Morsch, M., Hortle, E., Hogan, A., Chow, S., Gwee, S. S. L., Stoddart, J. J., Nicholson, G., Chung, R. & Cole, N. J. 2017. A Tol2 gateway-compatible toolbox for the study of the nervous system and neurodegenerative disease. Zebrafish, 14: 69-72. DOI: 10.1089/zeb.2016.1321

Gupta, V.K., Chitranshi, N., Gupta, V.B., Golzan, M., Dheer, Y., Wall, R.V., Georgevsky, D., King, A.E., Vickers, J.C., Chung, R., Graham, S. 2016. Amyloid β accumulation and inner retinal degenerative changes in Alzheimer's disease transgenic mouse. Neuroscience Letters 623: 52-56 DOI: 10.1016/j.neulet.2016.04.059

Shi, Y., Shi, B., Dass, A.V.E., Lu, Y., Sayyadi, N., Kautto, L., Willows, R.D., Chung, R., Piper, J., Nevalainen, H., Walsh, B., Jin, D. & Packer, N. H. 2016. Stable upconversion nanohybrid particles for specific prostate cancer cell immunodetection. Scientific Reports, 6: 1-11. [37533]. DOI: 10.1038/srep37533

Jennifer Cornish

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Wearne, T.A., Parker, L.M., Franklin, J.L., Goodchild, A.K., & Cornish, J.L. 2017. Behavioral sensitization to methamphetamine induces specific interneuronal mRNA pathology across the prelimbic and orbitofrontal cortices. Progress in Neuro-Psychopharmacology and Biological Psychiatry, 77, 42-48. DOI: 10.1016/j.pnpbp.2017.03.018

Baracz, S.J., Everett, N.A., McGregor, I.S., Cornish, J.L. 2016. Oxytocin in the nucleus accumbens core reduces reinstatement of methamphetamine-seeking behaviour in rats. Addiction Biology 21 (2): 316-325. DOI: 10.1111/adb.12198

Hassan, S.F., Wearne, T.A., Cornish, J.L., Goodchild, A.K. 2016. Effects of acute and chronic systemic methamphetamine on respiratory, cardiovascular and metabolic function, and cardiorespiratory reflexes. Journal of Physiology 59 (3): 763-780. DOI: 10.1113/JP271257

Wearne, T.A., Parker, L.M., Franklin, J.L., Goodchild, A.K., Cornish, J.L.  2016. GABAergic mRNA expression is upregulated in the prefrontal cortex of rats sensitized to methamphetamine. Behavioural Brain Research 297 Pages 224-230. DOI: 10.1016/j.bbr.2015.10.026

Michael Gillings

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Gillings, M.R. 2017. Class 1 integrons as invasive species. Current Opinion in Microbiology, 38, 10-15. DOI: 10.1016/j.mib.2017.03.002

Gillings, M.R., Paulsen, I.T., & Tetu, S.G. 2017. Genomics and the evolution of antibiotic resistance. Annals of the New York Academy of Sciences, 1388: 92-107. DOI: 10.1111/nyas.13268

Gillings, M.R. 2017. Lateral gene transfer, bacterial genome evolution, and the Anthropocene. Annals of the New York Academy of Sciences, 1389: 1-17. DOI: 10.1111/nyas.13213

Zhu, Y-G., Zhao, Y., Li, B., Huang, C-L., Zhang, S-Y., Yu, S., Chen, Y-S., Zhang, T., Gillings, M.R. & Su, J-Q. 2017. Continental-scale pollution of estuaries with antibiotic resistance genes. Nature Microbiology, 2: 16270. DOI: 10.1038/nmicrobiol.2016.270

Power, M.L., Samuel, A., Smith, J.J., Stark, J.S., Gillings, M.R., Gordon, D.M. 2016. Escherichia coli out in the cold: Dissemination of human-derived bacteria into the Antarctic microbiome. Environmental Pollution 215: 58-65.  DOI: 10.1016/j.envpol.2016.04.013

Ann Goodchild

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Parker, L.M., Le, S., Wearne, T., Hardwick, K., Kumar, N.N., Robinson, K.J., McMullan, S. & Goodchild, A.K. 2017. Neurochemistry of neurons in the ventrolateral medulla activated by hypotension: are the same neurons activated by glucoprivation? Journal of Comparative Neurology, 1-35. DOI: 10.1002/cne.24203

Wearne, T.A., Parker, L.M., Franklin, J.L., Goodchild, A.K., & Cornish, J.L. 2017. Behavioral sensitization to methamphetamine induces specific interneuronal mRNA pathology across the prelimbic and orbitofrontal cortices. Progress in Neuro-Psychopharmacology and Biological Psychiatry, 77, 42-48. DOI: 10.1016/j.pnpbp.2017.03.018

Bou Farah, L., Bowman, B.R., Bokiniec, P., Karim, S., Le, S., Goodchild, A.K., Mcmullan, S. 2016. Somatostatin in the rat rostral ventrolateral medulla: Origins and mechanism of action. Journal of Comparative Neurology 524 (2): 323-342. DOI: 10.1002/cne.23846

Le, S., Turner, A.J., Parker, L.M., Burke, P.G., Kumar, N.N., Goodchild, A.K., McMullan, S. 2016. Somatostatin 2a receptors are not expressed on functionally identified respiratory neurons in the ventral respiratory column of the rat. Journal of Comparative Neurology 524 (7): 1384-1398.  DOI: 10.1002/cne.23912

Gilles Guillemin

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Lee, J.M., Tan, V., Lovejoy, D., Braidy, N., Rowe, D.B., Brew, B.J., & Guillemin, G.J. 2017. Involvement of quinolinic acid in the neuropathogenesis of amyotrophic lateral sclerosis. Neuropharmacology,112: 346-364. DOI: 10.1016/j.neuropharm.2016.05.011

Lennon, M.J., Jones, S.P., Lovelace, M.D., Guillemin, G.J., & Brew, B.J. 2017. Bcl11b-A critical neurodevelopmental transcription factor-roles in health and disease. Frontiers in Cellular Neuroscience, 11 [89]. DOI: 10.3389/fncel.2017.00089

Polikarpov, D., Sabaretnam, T., Liang, L., Care, A., Sunna, A., Campbell, D., Walsh, B., Guillemin, G., Zvyagin, A., & Gillatt, D. 2017. Targeted upconversion photoluminescent nanoconjugates selectively label TCC cells expressing Glypican-1. BJU International, 119: 72-72.

Barcia, C., Guillemin, G.J., Curtin, J.F., Zirger, J.M. 2016. Editorial: Glial cells: Managers of neuro-immunity. Frontiers in Cellular Neuroscience 10, Article number 60. DOI: 10.3389/fncel.2016.00060

Chan, D.K.Y., Braidy, N., Xu, Y.H., Chataway, T., Guo, F., Guillemin, G.J., Teo, C., Gai, W.P. 2016. Interference of α-Synuclein Uptake by Monomeric β-Amyloid1–40 and Potential Core Acting Site of the Interference. Neurotoxicity Research 30 June 2016, Pages 1-7.  DOI: 10.1007/s12640-016-9644-2

Grant Hose

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Hose, G.C., Fryirs, K.A., Bailey, J., Ashby, N., White, T., & Stumpp, C. 2017. Different depths, different fauna: habitat influences on the distribution of groundwater invertebrates. Hydrobiologia, 1-13. DOI: 10.1007/s10750-017-3166-7

Korbel, K.L., & Hose, G.C. 2017. The weighted groundwater health index: Improving the monitoring and management of groundwater resources. Ecological Indicators, 75: 164-181. DOI: 10.1016/j.ecolind.2016.11.039

Chariton, A.A., Sun, M., Gibson, J., Webb, J.A., Leung, K.M.Y., Hickey, C.W., Hose, G.C. 2016. Emergent technologies and analytical approaches for understanding the effects of multiple stressors in aquatic environments. Marine and Freshwater Research 67 (4): 414-428. DOI: 10.1071/MF15190

Hose, G.C., Symington, K., Lott, M.J., Lategan, M.J. 2016. The toxicity of arsenic(III), chromium(VI) and zinc to groundwater copepods. Environmental Science and Pollution Research (in press). DOI: 10.1007/s11356-016-7046-x

Maute, K., French, K., Story, P., Bull, C.M., Hose, G.C. 2016. Effects of two locust control methods on wood-eating termites in arid Australia. Journal of Insect Conservation 20 (1): 107-118. DOI: 10.1007/s10841-016-9844-3

Walker, P.W., Story, P.G., Hose, G.C. 2016. Comparative effects of pesticides, fenitrothion and fipronil, applied as ultra-low volume formulations for locust control, on non-target invertebrate assemblages in Mitchell grass plains of south-west Queensland, Australia. Crop Protection 89: 38-46. DOI: 10.1016/j.cropro.2016.06.020

Bridget Mabbutt

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Wason, A., Pearce, F.G., Gerrard, J.A., & Mabbutt, B.C. 2017. Archaeal Lsm rings as stable self-assembling tectons for protein nanofabrication. Biochemical and Biophysical Research Communications, 489: 326-331. DOI: 10.1016/j.bbrc.2017.05.129

Farrugia, D.N., Elbourne, L.D.H., Mabbutt, B.C., & Paulsen, I.T. 2015. A novel family of integrases associated with prophages and genomic islands integrated within the tRNA-dihydrouridine synthase A (dusA) gene. Nucleic Acids Research, 43: 4547-4557. DOI: 10.1093/nar/gkv337

Shah, B.S., Hassan, K. A., Clift, H.E., Harrop, S.J., Paulsen, I.T., & Mabbutt, B.C. 2015. Investigating Acinetobacter baumannii pathogenesis: crystal structure of WbjB epimerase from a polysaccharide biosynthesis cluster. Protein science: a publication of the Protein Society, 24(S1), 63-63. DOI: 10.1002/pro.2823

David Raftos

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Goncalves, P., Thompson, E.L., & Raftos, D.A. 2017. Contrasting impacts of ocean acidification and warming on the molecular responses of CO2-resilient oysters. BMC Genomics, 18(1), [431]. DOI: 10.1186/s12864-017-3818-z

Masood, M., Herberstein, M.E., Raftos, D.A., & Nair, S.V. 2017. Double stranded RNA is processed differently in two oyster species. Developmental and Comparative Immunology, 76, 285-291. DOI: 10.1016/j.dci.2017.06.017

Green, T.J., Chataway, T., Melwani, A.R., Raftos, D.A. 2016. Proteomic analysis of hemolymph from poly(I:C)-stimulated Crassostrea gigas.  Fish and Shellfish Immunology, 48, pp. 39-42. DOI: 10.1016/j.fsi.2015.11.018

Masood M, Raftos DA, Nair SV. 2016. Two oyster species that show differential susceptibility to virus infection also show differential proteomic responses to generic dsRNA. J Proteome Research 15(6):1735-46. doi: 10.1021/acs.jproteome.5b00615

Melwani, A.R., Thompson, E.L., Raftos, D.A. 2016. Differential proteomic response of Sydney rock oysters (Saccostrea glomerata) to prolonged environmental stress. Aquatic Toxicology, 173, pp. 53-62.  DOI: 10.1016/j.aquatox.2016.01.003

Shoba Ranganathan

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Baker, M.S., Ahn, S.B., Mohamedali, A., Islam, M.T., Cantor, D., Verhaert, P. D., Fanayan, S., Sharma, S., Nice, E. C., Connor, M. & Ranganathan, S. 2017. Accelerating the search for the missing proteins in the human proteome. Nature Communications, 8, 1-13. [14271]. DOI: 10.1038/ncomms14271

Islam, M., Mohamedali, A., Ahn, S.B., Nawar, I., Baker, M.S., & Ranganathan, S. 2017. A systematic bioinformatics approach to identify high quality mass spectrometry data and functionally annotate proteins and proteomes. In S. Keerthikumar, & S. Mathivanan (Eds.), Proteome bionformatics, Methods in Molecular Biology; Vol. 1549, pp. 163-176; DOI: 10.1007/978-1-4939-6740-7_13

Islam, M.T., Mohamedali, A., Fernandes, C.S., Baker, M.S., & Ranganathan, S. 2017. De novo peptide sequencing: Deep mining of high-resolution mass spectrometry data. In S. Keerthikumar, & S. Mathivanan (Eds.), Proteome Bioinformatics: Methods in Molecular Biology Vol. 1549, pp. 119-134; DOI: 10.1007/978-1-4939-6740-7_10

Patel, A. R., Hardianto, A., Ranganathan, S., & Liu, F. 2017. Divergent response of homologous ATP sites to stereospecific ligand fluorination for selectivity enhancement. Organic and Biomolecular Chemistry, 15: 1570-1574. DOI: 10.1039/c7ob00129k

Liu, F., Koval, M., Ranganathan, S., Fanayan, S., Hancock, W.S., Lundberg, E.K., Beavis, R.C., Lane, L., Duek, P., McQuade, L., Kelleher, N.L., Baker, M.S. 2016. Systems Proteomics View of the Endogenous Human Claudin Protein Family. Journal of Proteome Research 15 (2): 339-359. DOI: 10.1021/acs.jproteome.5b00769

Georgy Sofronov

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Sofronov, G. Y. 2016. A multiple optimal stopping rule for a buying–selling problem with a deterministic trend. Statistical Papers, 57: 1107-1119. DOI: 10.1007/s00362-016-0776-5

Targino, R.S., Peters, G.W., Sofronov, G., Shevchenko, P.V. 2016. Optimal Exercise Strategies for Operational Risk Insurance via Multiple Stopping Times. Methodology and Computing in Applied Probability (in press)  DOI: 10.1007/s11009-016-9493-8

Robert Willows

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Sawicki, A., Zhou, S., Kwiatkowski, K., Luo, M., & Willows, R. 2017. 1-N-histidine phosphorylation of ChlD by the AAA⁺ ChlI2 stimulates magnesium chelatase activity in chlorophyll synthesis. Biochemical Journal, 474: 2095-2105. DOI: 10.1042/BCJ20161094

Li, Y., Lin, Y., Garvey, C.J., Birch, D., Corkery, R.W., Loughlin, P.C., Scheer, H., Willows, R.D., Chen, M. 2016. Characterization of red-shifted phycobilisomes isolated from the chlorophyll f-containing cyanobacterium Halomicronema hongdechloris. Biochimica et Biophysica Acta - Bioenergetics, 1857 (1), pp. 107-114. DOI: 10.1016/j.bbabio.2015.10.009

Loughlin, P.C., Duxbury, Z., Mugerwa, T.T.M., Smith, P.M.C., Willows, R.D., Chen, M. 2016. Spectral properties of bacteriophytochrome AM1-5894 in the chlorophyll d-containing cyanobacterium Acaryochloris marina.  Scientific Reports 6 Article number 27547.  DOI: 10.1038/srep27547

Tarahi Tabrizi S, Sawicki A, Zhou S, Luo M, Willows RD. 2016. GUN4-protoporphyrin IX is a singlet oxygen generator with consequences for plastid retrograde signalling. Journal of Biological Chemistry. 291(17):8978-8984. pii: jbc.C116.719989.

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