Publications 2017

Publications 2017

Su Yin Lim, Jenny H. Lee, Sarah J. Welsh, Seong Beom Ahn, Edmond Breen, Alamgir Khan, Matteo S. Carlino, Alexander M. Menzies, Richard F. Kefford, Richard A. Scolyer, Georgina V. Long and Helen Rizos. Evaluation of two high-throughput proteomic technologies for plasma biomarker discovery in immunotherapy treated melanoma patients. Biomarker Research (2017) 5:32 DOI 10.1186/s40364-017-0112-9

Wu JX, Pascovici D, Ignjatovic V, Song X, Krisp C, Molloy MP. Improving Protein Detection Confidence Using SWATH-Mass Spectrometry with Large Peptide Reference Libraries. Proteomics. 2017 Oct;17(19). doi: 10.1002/pmic.201700174.

Lee A, Rayner SL, De Luca A, Gwee SSL, Morsch M, Sundaramoorthy V, Shahheydari H, Ragagnin A, Shi B, Yang S, Williams KL, Don EK, Walker AK, Zhang KY, Yerbury JJ, Cole NJ, Atkin JD, Blair IP,Molloy MP, Chung RS. Casein kinase II phosphorylation of cyclin F at serine 621 regulates the Lys48-ubiquitylation E3 ligase activity of the SCF((cyclin F)) complex. Open Biol. 2017 Oct;7(10). pii:170058. doi: 10.1098/rsob.170058.

Mirzaei M, Gupta VB, Chick JM, Greco TM, Wu Y, Chitranshi N, Wall RV, Hone E, Deng L, Dheer Y, Abbasi M, Rezaeian M, Braidy N, You Y, Salekdeh GH, Haynes PA, Molloy MP, Martins R, Cristea IM, Gygi SP, Graham SL, Gupta VK. Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes. Sci Rep. 2017 Oct 4;7(1):12685. doi:10.1038/s41598-017-12858-7.

Kamath KS, Krisp C, Chick J, Pascovici D, Gygi SP, Molloy MP. Pseudomonas aeruginosa Proteome under Hypoxic Stress Conditions Mimicking the Cystic Fibrosis Lung. J Proteome Res. 2017 16(10), 3917-3928.

Tan S-H, Lee A, Pascovici D, Care N, Birzniece V, Ho K, Molloy MP, Khan A. Plasma biomarker proteins for detection of human growth hormone administration in athletes. Scientific Reports 7, 10039., doi:10.1038/s41598-017-09968-7.

Collins BC, Hunter CL, Liu Y, Schilling B, Rosenberger G, Bader SL, Chan DW, Gibson BW, Gingras A-C, Held JM, Hirayama-Kurogi M, Hou G, Krisp C, Larsen B, Lin L, Liu S, Molloy MP, Moritz RL, Ohtsuki S, Schlapbach R, Selevsek N, Thomas SN, Tzeng S-C, Zhang H, Aebersold R.  Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry. Nat. Commun. 2017 doi:

Ahuja R, Almuzian M, Khan A, Pascovici D, Dalci O, Darendeliler M. A preliminary investigation of short-term cytokine expression in gingival crevicular fluid secondary to high-level orthodontic forces and the associated root resorption: case series analytical study. Progress in orthodontics 2017; 18: 23.

Breen EJ. Protein Multiplexed Immunoassay Analysis with R. Methods Mol Biol. 2017;1619:495-537. doi: 10.1007/978-1-4939-7057-5_35.

O’Doherty PJ, Khan A, Johnson AJ, Rogers PJ, Bailey TD, Wu MJ. Proteomic response to linoleic acid hydroperoxide in Saccharomyces cerevisiae.FEMS Yeast Research, 17, 2017, fox022, doi: 10.1093/demsyr/fox022

Krisp C, Molloy MP. SWATH Mass Spectrometry for Proteomics of Non-Depleted Plasma. Methods Mol Biol. 2017;1619:373-383. doi: 10.1007/978-1-4939-7057-5_25. PubMed PMID: 28674897

McRobb LS, McKay MJ, Gamble JR, Grace M, Moutrie V, Santos ED, Lee VS, Zhao Z, Molloy MP, Stoodley MA. Ionizing radiation reduces ADAM10 expression in brain microvascular endothelial cells undergoing stress-induced senescence. Aging (Albany NY). 2017 Apr 17. doi: 10.18632/aging.101225.

Hogan AL, Don EK, Rayner SL, Lee A, Laird AS, Watchon M, Winnick C, Tarr IS, Morsch M, Fifita JA, Gwee S, Formella I, Hortle E, Yuan K, Molloy MP, Williams KL, Nicholson GA, Chung RS, Blair IP, Cole NJ. Expression of ALS/FTD-linked mutant CCNF in zebrafish leads to increased cell death in the spinal cord and an aberrant motor phenotype. Hum Mol Genet. 2017 Apr 21. doi: 10.1093/hmg/ddx136. [Epub ahead of print] PubMed PMID: 28444311.

Bjelosevic S, Pascovici D, Ping H, Karlaftis V, Zaw T, Song X, Molloy MP, Monagle P, Ignjatovic V. Quantitative age-specific variability of plasma proteins in healthy neonates, children and adults. Mol Cell Proteomics. 2017 Mar 23. pii: mcp.M116.066720. doi: 10.1074/mcp.M116.066720.

Everest-Dass AV, Kolarich D, Pascovici D, Packer NH. Blood group antigen expression is involved in C. albicans interaction with buccal epithelial cells. Glycoconj J. 2017 Feb;34(1):31-50.

Simonian M, Loo RRO, Rannulu N, Loo JA, Molloy MP, Stoodley MA.  Identification of protein targets in cerebral endothelial cells for brain arteriovenous malformation (AVMs) molecular therapies. Clin Proteom (2017) 14:17.

Mirzaei M, Pascovici D, Wu JX, Chick J, Wu Y, Cooke B, Haynes P, Molloy MP. TMT One-Stop Shop: From Reliable Sample Preparation to Computational Analysis Platform. Methods Mol. Biol. 2017;1549:45-66.

Johnson AJ, Zaman MS, Veljanoski F, Phrakaysone A, Li S, O’Doherty PJ, Petersingham G, Perrone GG, Molloy MP and Wu MJ. Unravelling the role of protein kinase CK2 in metal toxicity by gene deletion mutants. Metallomics, 2017 Feb 14. doi: 10.1039/c6mt00230g. [Epub ahead of print].

McRobb LS, Lee VS, Simonian M, Zhao Z, Thomas SG, Wiedmann M, Raj JV, Grace M, Moutrie V, McKay MJ, Molloy MP, Stoodley MA. Radiosurgery Alters the Endothelial Surface Proteome: Externalized Intracellular Molecules as Potential Vascular Targets in Irradiated Brain Arteriovenous Malformations. Radiat. Res. 2017 Jan; 187(1):66-78

Truong HH, Neilson KA, McInerney BV, Khoddami A, Roberts TH, Cadogan DJ, Liu SY, Selle PH. Comparative performance of broiler chickens offered nutritionally equivalent diets based on six diverse,‘tannin-free’sorghum varieties with quantified concentrations of phenolic compounds, kafirin, and phytate. Animal Production Science 2017; 57: 828-838.

Yashin D, Dalci O, Almuzian M, Chiu J, Ahuja R, Goel A, Darendeliler M. Markers in blood and saliva for prediction of orthodontically induced inflammatory root resorption: a retrospective case controlled-study. Progress in orthodontics 2017; 18: 27.

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