Publications by APAF users

Publications by APAF users


Dashti, N.H., Abidin, R.S., Sainsbury, F.Programmable in Vitro Coencapsidation of Guest Proteins for Intracellular Delivery by Virus-like Particles ACS Nano 10.1021/acsnano.8b01059

Agbaje, O.B.A., Ben Shir, I., Zax, D.B., Schmidt, A., Jacob, D.E.Biomacromolecules within bivalve shells: Is chitin abundant? Acta Biomaterialia 10.1016/j.actbio.2018.09.009

Turchini, G.M., Hermon, K.M., Francis, D.S.Fatty acids and beyond: Fillet nutritional characterisation of rainbow trout (Oncorhynchus mykiss) fed different dietary oil sources Aquaculture 10.1016/j.aquaculture.2017.11.056

Smith, E.R., Hewitson, T.D., Hanssen, E., Holt, S.G.Biochemical transformation of calciprotein particles in uraemia Bone 10.1016/j.bone.2018.02.023

Aizat, W.M., Ibrahim, S., Rahnamaie-Tajadod, R., Loke, K.-K., Goh, H.-H., Noor, N.M.Extensive mass spectrometry proteomics data of Persicaria minor herb upon methyl jasmonate treatment Data in Brief 10.1016/j.dib.2017.09.063

Cross, M., Biberacher, S., Park, S.-Y., Rajan, S., Korhonen, P., Gasser, R.B., Kim, J.-S., Coster, M.J., Hofmann, A.Trehalose 6-phosphate phosphatases of Pseudomonas aeruginosa FASEB Journal 10.1096/fj.201800500R

Nongmaithem, B.D., Mouatt, P., Eichinger, Y., Savins, D., Benkendorff, K.Effect of cooking on nutrient composition and anticancer indoles of the marine whelk Dicathais orbita – Can it be another high-value seafood product? FoodChemistry 10.1016/j.foodchem.2018.05.102

Luo, J., Taylor, C., Nebl, T., Ng, K., Bennett, L.E.Effects of macro-nutrient, micro-nutrient composition and cooking conditions on in vitro digestibility of meat and aquatic dietary proteins Food Chemistry 10.1016/j.foodchem.2018.01.164

Abrahams, J.L., Campbell, M.P. and Packer, N.HBuilding a PGC-LC-MS N-glycan retention library and elution mapping resource Glycoconjugate Journal 10.1007/s10719-017-9793-4

Torres-Hernandez, M., Howell, K., Bennett, L.E.Addition of proline-rich whey peptides during dehydration increases solubility of rehydrated milk protein concentrates International Dairy Journal 10.1016/j.idairyj.2018.05.010

Morshed, M.T., Vuong, D., Crombie, A., Lacey, A.E., Karuso, P., Lacey, E. and Piggott, A.MExpanding antibiotic chemical space around the nidulin pharmacophore Organic and Biomolecular Chemistry 10.1039/c8ob00545a

Dugdale, B., Kato, M., Deo, P., Plan, M., Harrison, M., Lloyd, R., Walsh, T., Harding, R., Dale, J.Production of human vitronectin in Nicotiana benthamiana using the INPACT hyperexpression platform Plant Biotechnology Journal 10.1111/pbi.12779

Rabi, R., Larcombe, S., Mathias, R., McGowan, S., Awad, M., Lyras, D.Clostridium sordellii outer spore proteins maintain spore structural integrity and promote bacterial clearance from the gastrointestinal tract PLoS Pathogens 10.1371/journal.ppat.1007004

Khaleque, H.N., Shafique, R., Kaksonen, A.H., Boxall, N.J. and Watkin, E.L.Quantitative proteomics using SWATH-MS identifies mechanisms of chloride tolerance in the halophilic acidophile Acidihalobacter prosperus DSM 14174 Research in Microbiology 10.1016/j.resmic.2018.07.002


Angell AR, Paul NA, de Nys R. A comparison of protocols for isolating and concentrating protein from the green seaweed Ulva ohnoi. Journal of Applied Phycology 2017;29: 1011-1026.

Ashwood C, Abrahams JL, Nevalainen H, Packer NH. Enhancing structural characterisation of glucuronidated O‐linked glycans using negative mode ion trap higher energy collision‐induced dissociation mass spectrometry. Rapid Communications in Mass Spectrometry 2017; 31: 851-858.

Bett B, Gollasch S, Moore A, James W, Armstrong J, Walsh T, Harding R, Higgins TJ. Transgenic cowpeas (Vigna unguiculata L. Walp) expressing Bacillus thuringiensis Vip3Ba protein are protected against the Maruca pod borer (Maruca vitrata). Plant Cell, Tissue and Organ Culture (PCTOC) 2017: 1-11.

Brain-Isasi S, Álvarez-Lueje A, Higgins TJV. Heterologous expression of an α-amylase inhibitor from common bean (Phaseolus vulgaris) in Kluyveromyces lactis and Saccharomyces cerevisiae. Microbial Cell Factories 2017; 16: 110.

Cardoso FC, Dekan Z, Smith JJ, Deuis JR, Vetter I, Herzig V, Alewood PF, King GF, Lewis RJ. Modulatory features of the novel spider toxin μ‐TRTX‐Df1a isolated from the venom of the spider Davus fasciatus. British Journal of Pharmacology 2017.

Cross M, Lepage R, Rajan S, Biberacher S, Young ND, Kim B-N, Coster MJ, Gasser RB, Kim J-S, Hofmann A. Probing function and structure of trehalose-6-phosphate phosphatases from pathogenic organisms suggests distinct molecular groupings. The FASEB Journal 2017; 31: 920-926.

Deuis JR, Dekan Z, Wingerd JS, Smith JJ, Munasinghe NR, Bhola RF, Imlach WL, Herzig V, Armstrong DA, Rosengren KJ. Pharmacological characterisation of the highly NaV1. 7 selective spider venom peptide Pn3a. Scientific Reports 2017; 7.

Dexter A, Fletcher N, Creasey R, Filardo F, Boehm M, Jack K. Fabrication and characterization of hydrogels formed from designer coiled-coil fibril-forming peptides. RSC Advances 2017; 7: 27260-27271.

Dugdale B, Kato M, Deo P, Plan M, Harrison M, Lloyd R, Walsh T, Harding R, Dale J. Production of human vitronectin in Nicotiana benthamiana using the INPACT hyper‐expression platform. Plant Biotechnology Journal 2017.

Dutta D, Zhao T, Cheah KB, Holmlund L, Willcox MD. Activity of a melimine derived peptide Mel4 against Stenotrophomonas, Delftia, Elizabethkingia, Burkholderia and biocompatibility as a contact lens coating. Contact Lens and Anterior Eye 2017.

Farey JE, Preda TC, Fisher OM, Levert-Mignon AJ, Stewart RL, Karsten E, Herbert BR, Swarbrick MM, Lord RV. Effect of laparoscopic sleeve gastrectomy on fasting gastrointestinal, pancreatic, and adipose-derived hormones and on non-esterified fatty acids. Obesity Surgery 2017; 27: 399-407.

Farey JE, Fisher OM, Levert-Mignon AJ, Forner PM, Lord RV. Decreased levels of circulating cancer-associated protein biomarkers following bariatric surgery. Obesity Surgery 2017; 27: 578-585.

Fitter S, Gronthos S, Ooi SS, Zannettino AC. The Mesenchymal Precursor Cell Marker Antibody STRO‐1 Binds to Cell Surface Heat Shock Cognate 70. STEM CELLS 2017;35: 940-951.

Han Z, Kautto L, Nevalainen H. Secretion of Proteases by an Opportunistic Fungal Pathogen Scedosporium aurantiacum. PloS one 2017; 12: e0169403.

Higdon R, Kala J, Wilkins D, Yan J, Sethi MK, Lin L, Liu S, Montague E, Janko I, Choiniere J. Integrated Proteomic and Transcriptomic-Based Approaches to Identifying Signature Biomarkers and Pathways for Elucidation of Daoy and UW228 Subtypes. Proteomes 2017; 5: 5.

Hogan AL, Don EK, Rayner SL, Lee A, Laird AS, Watchon M, Winnick C, Tarr IS, Morsch M, Fifita JA. Expression of ALS/FTD-linked mutant CCNF in zebrafish leads to increased cell death in the spinal cord and an aberrant motor phenotype. Human Molecular Genetics 2017: ddx136.

Hsu B, Hirani V, Cumming RG, Naganathan V, Blyth FM, Wright FC, Waite LM, Seibel MJ, Handelsman DJ, Le Couteur DG. Cross-sectional and Longitudinal Relationships between Inflammatory Biomarkers and Frailty in Community-dwelling Older Men: the Concord Health and Ageing in Men Project. The Journals of Gerontology: Series A 2017

Kaushik P, Dowling K, Adhikari R, Barrow CJ, Adhikari B. Effect of extraction temperature on composition, structure and functional properties of flaxseed gum. Food chemistry 2017; 215: 333-340.

Lagos L, Tandberg JI, Repnik U, Boysen P, Ropstad E, Varkey D, Paulsen IT, Winther-Larsen HC. Characterization and Vaccine Potential of Membrane Vesicles Produced by Francisella noatunensis sup. orientalis in an Adult Zebrafish Model. Clinical and Vaccine Immunology 2017: CVI. 00557-00516.

Lim CK, Bilgin A, Lovejoy DB, Tan V, Bustamante S, Taylor BV, Bessede A, Brew BJ, Guillemin GJ. Kynurenine pathway metabolomics predicts and provides mechanistic insight into multiple sclerosis progression. Scientific Reports 2017; 7: 41473.

Pearson JS, Giogha C, Mühlen S, Nachbur U, Pham CL, Zhang Y, Hildebrand JM, Oates CV, Lung TWF, Ingle D. EspL is a bacterial cysteine protease effector that cleaves RHIM proteins to block necroptosis and inflammation. Nature Microbiology 2017; 2: 16258.

Pla D, Bande BW, Welton RE, Paiva OK, Sanz L, Segura A, Wright CE, Calvete JJ, Gutiérrez JM, Williams DJ. Proteomics and antivenomics of Papuan black snake (Pseudechis papuanus) venom with analysis of its toxicological profile and the preclinical efficacy of Australian antivenoms. Journal of proteomics 2017; 150: 201-215.

Ram R, Chand RV, Forrest A, Southgate PC. Effect of processing method on quality, texture, collagen and amino acid composition of sandfish (Holothuria scabra). LWT-Food Science and Technology 2017.

Salampessy J, Reddy N, Phillips M, Kailasapathy K. Isolation and characterization of nutraceutically potential ACE-Inhibitory peptides from leatherjacket (Meuchenia sp.) protein hydrolysates. LWT-Food Science and Technology 2017; 80: 430-436.

Skylas DJ, Blanchard CL, Quail KJ. Variation in Nutritional Composition of Australian Mungbean Varieties. Journal of Agricultural Science 2017; 9: 45.

Smith JJ, Herzig V, Ikonomopoulou MP, Dziemborowicz S, Bosmans F, Nicholson GM, King GF. Insect-Active Toxins with Promiscuous Pharmacology from the African Theraphosid Spider Monocentropus balfouri. Toxins 2017; 9: 155.

Wang H-F, Wibowo D, Shao Z, Middelberg APJ, Zhao C-X. Design of Modular Peptide Surfactants and their Surface Activity. Langmuir 2017.

Wibowo D, Wang H-F, Shao Z, Middelberg AP, Zhao C-X. Interfacial Films Formed by a Biosurfactant Modularized with a Silken Tail. The Journal of Physical Chemistry C 2017; 121: 14658-14667.

Wu T, Taylor C, Nebl T, Ng K, Bennett LE. Effects of chemical composition and baking on in vitro digestibility of proteins in breads made from selected gluten-containing and gluten-free flours. Food Chemistry 2017; 233: 514-524.


Beekman M, Preece K, Schaerf T. Dancing for their supper: Do honeybees adjust their recruitment dance in response to the protein content of pollen? Insectes Sociaux 2016; 63: 117-126.

Carl C, Magnusson M, Paul NA, de Nys R. The yield and quality of multiple harvests of filamentous Ulva tepida. Journal of Applied Phycology 2016; 28: 2865-2873.

Cogger VC, Mohamad M, Solon-Biet S, Senior AM, Warren A, O'Reilly JN, Tung BT, Svistounov D, McMahon A, Fraser R. Dietary macronutrients and the aging liver sinusoidal endothelial cell. American Journal of Physiology-Heart and Circulatory Physiology 2016: ajpheart. 00949.02015.

Cole AJ, Neveux N, Whelan A, Morton J, Vis M, de Nys R, Paul NA. Adding value to the treatment of municipal wastewater through the intensive production of freshwater macroalgae. Algal Research 2016; 20: 100-109.

Cross M, Lepage R, Rajan S, Biberacher S, Young ND, Kim B-N, Coster MJ, Gasser RB, Kim J-S, Hofmann A. Probing function and structure of trehalose-6-phosphate phosphatases from pathogenic organisms suggests distinct molecular groupings. The FASEB Journal 2016: fj. 201601149R.

Delaney C, Spark J. A randomised controlled trial of two supervised exercise regimens and their impact on inflammatory burden in patients with intermittent claudication. Vascular 2016; 24: 264-272.

Dutta D, Kumar N, DP Willcox M. Antimicrobial activity of four cationic peptides immobilised to poly-hydroxyethylmethacrylate. Biofouling 2016; 32: 429-438.

Gorasia DG, Veith PD, Hanssen EG, Glew MD, Sato K, Yukitake H, Nakayama K, Reynolds EC. Structural insights into the PorK and PorN components of the Porphyromonas gingivalis Type IX secretion system. PLoS Pathog 2016; 12: e1005820.

Herzig V, Ikonomopoulou M, Smith JJ, Dziemborowicz S, Gilchrist J, Kuhn-Nentwig L, Rezende FO, Moreira LA, Nicholson GM, Bosmans F. Molecular basis of the remarkable species selectivity of an insecticidal sodium channel toxin from the African spider Augacephalus ezendami. Scientific reports 2016; 6.

Hesselager MO, Everest-Dass AV, Thaysen-Andersen M, Bendixen E, Packer NH. FUT1 genetic variants impact protein glycosylation of porcine intestinal mucosa. Glycobiology 2016: cww009.

Hossain MA, Iji PA, Islam A-FMF. Gross responses and apparent ileal digestibility of amino acids and minerals in broiler chicken fed vegetable-based starter diets supplemented with microbial enzymes. Turkish Journal of Veterinary and Animal Sciences 2016; 40: 583-589.

Ikonomopoulou MP, Smith JJ, Herzig V, Pineda SS, Dziemborowicz S, Er S-Y, Durek T, Gilchrist J, Alewood PF, Nicholson GM. Isolation of two insecticidal toxins from venom of the Australian theraphosid spider Coremiocnemis tropix. Toxicon 2016; 123: 62-70

Karuso P, Loa Kum Cheung W, Peixoto PA, Boulangé A, Franck X. Epicocconone–Hemicyanine Hybrids: Near Infrared Fluorophores for Protein Staining and Cell Imaging. Chemistry-A European Journal 2016.

Lee H, Kwon YC, Kim E. Jellyfish Venom and Toxins: A Review. Marine and Freshwater Toxins 2016: 341-358.

Leong LE, Denman SE, Hugenholtz P, McSweeney CS. Amino acid and peptide utilization profiles of the fluoroacetate-degrading bacterium Synergistetes Strain MFA1 under varying conditions. Microbial ecology 2016; 71: 494-504.

Masood M, Raftos DA, Nair SV. Two Oyster Species That Show Differential Susceptibility to Virus Infection Also Show Differential Proteomic Responses to Generic dsRNA. Journal of proteome research 2016; 15: 1735-1746.

Mata L, Magnusson M, Paul NA, de Nys R. The intensive land-based production of the green seaweeds Derbesia tenuissima and Ulva ohnoi: biomass and bioproducts. Journal of applied phycology 2016; 28: 365-375.

Moore K, Mullan B, Kim JC, Dunshea F. The Effect of Lupinus albus and Calcium Chloride on Growth Performance, Body Composition, Plasma Biochemistry and Meat Quality of Male Pigs Immunized Against Gonadotrophin Releasing Factor. Animals 2016; 6: 78.

Moore KE, Mangos DN, Slattery AD, Raston CL, Boulos RA. Wool deconstruction using a benign eutectic melt. RSC Advances 2016; 6: 20095-20101.

Moore K, Mullan B, Kim J, Dunshea F. Standardized ileal digestible lysine requirements of male pigs immunized against gonadotrophin releasing factor. Journal of animal science 2016; 94: 1982-1992.

Muhlack RA, O’Neill BK, Waters EJ, Colby CB. Optimal Conditions for Controlling Haze-Forming Wine Protein with Bentonite Treatment: Investigation of Matrix Effects and Interactions Using a Factorial Design. Food and Bioprocess Technology 2016; 9: 936-943.

Nguyen TT, Zhang W, Barber AR, Su P, He S. Microwave-Intensified Enzymatic Deproteinization of Australian Rock Lobster Shells (Jasus edwardsii) for the Efficient Recovery of Protein Hydrolysate as Food Functional Nutrients. Food and bioprocess technology 2016; 9: 628-636.

Osteen JD, Herzig V, Gilchrist J, Emrick JJ, Zhang C, Wang X, Castro J, Garcia-Caraballo S, Grundy L, Rychkov GY. Selective spider toxins reveal a role for the Nav1. 1 channel in mechanical pain. Nature 2016; 534: 494-499.

Powell D, Velleman S, Cowieson A, Muir W. Methionine concentration in the pre-starter diet: its effect on broiler breast muscle development. Animal Production Science 2016.

Quach Truong IOJ, Nocon AL, Soon JT, Wissmueller S, Campbell DH, Walsh BJ. Glypican-1 as a Biomarker for Prostate Cancer: Isolation and Characterization. Journal of Cancer 2016; 7: 1002.

Rivera-Hernandez T, Pandey M, Henningham A, Cole J, Choudhury B, Cork AJ, Gillen CM, Ghaffar KA, West NP, Silvestri G. Differing Efficacies of Lead Group A Streptococcal Vaccine Candidates and Full-Length M Protein in Cutaneous and Invasive Disease Models. mBio 2016; 7: e00618-00616.

Selle P, Truong H, Khoddami A, Moss A, Roberts T, Liu S. The impacts of hammer-mill screen size and grain particle size on the performance of broiler chickens offered diets based on two red sorghum varieties. British Poultry Science 2016: 1-10.

Solon-Biet SM, Cogger VC, Pulpitel T, Heblinski M, Wahl D, McMahon AC, Warren A, Durrant-Whyte J, Walters KA, Krycer JR. Defining the nutritional and metabolic context of FGF21 using the geometric framework. Cell Metabolism 2016; 24: 555-565.

Tandberg JI, Lagos LX, Langlete P, Berger E, Rishovd A-L, Roos N, Varkey D, Paulsen IT, Winther-Larsen HC. Comparative Analysis of Membrane Vesicles from Three Piscirickettsia salmonis Isolates Reveals Differences in Vesicle Characteristics. PloS one 2016; 11: e0165099.

Truong HH, Khoddami A, Moss AF, Liu SY, Selle PH. The potential of rapid visco-analysis starch pasting profiles to gauge the quality of sorghum as a feed grain for chicken-meat production. Animal Nutrition 2016.

Van Noorden GE, Verbeek R, Dinh QD, Jin J, Green A, Ng JLP, Mathesius U. Molecular signals controlling the inhibition of nodulation by nitrate in Medicago truncatula. International Journal of Molecular Sciences 2016; 17: 1060.

Yang DC, Deuis JR, Dashevsky D, Dobson J, Jackson TN, Brust A, Xie B, Koludarov I, Debono J, Hendrikx I. The Snake with the Scorpion’s sting: novel three-finger toxin sodium channel activators from the venom of the long-glanded blue coral snake (Calliophis bivirgatus). Toxins 2016; 8: 303.

Zaman M, Ozberk V, Langshaw EL, McPhun V, Powell JL, Phillips ZN, Ho MF, Calcutt A, Batzloff MR, Toth I. Novel platform technology for modular mucosal vaccine that protects against streptococcus. Scientific Reports 2016; 6.


Abrahams JL, Packer NH and Campbell MP. Relative quantitation of multi-antennary N-glycan classes: combining PGC-LC-ESI-MS with exoglycosidase digestion. The Royal Society of Chemistry 2015 DOI: 10.1039/C5AN00691K (Communication) Analyst, 2015, 140, 5444-5449

Ahn SB, Chan C, Dent OF, Mohamedali A, Kwun SY, Clarke C, Fletcher J, Chapuis PH, Nice EC, Baker MS. Epithelial and Stromal Cell Urokinase Plasminogen Activator Receptor Expression Differentially Correlates with Survival in Rectal Cancer Stages B and C Patients.  PLOS Published:February 18, 2015 DOI: 10.1371/journal.pone.0117786

Angell AR, Mata L, Nys R, Paul NA. Indirect and direct effects of salinity on the quantity and quality of total amino acids in Ulva ohnoi (Chlorophyta). Journal of phycology 2015; 51: 536-545.

Atack JM, Srikhanta YN, Fox KL, Jurcisek JA, Brockman KL, Clark TA, Boitano M, Power PM, Jen FE-C, McEwan AG. A biphasic epigenetic switch controls immunoevasion, virulence and niche adaptation in non-typeable Haemophilus influenzae. Nature communications 2015; 6.

Borg RJ, Samson AL, Au AE-L, Scholzen A, Fuchsberger M, Kong YY, Freeman R, Mifsud NA, Plebanski M, Medcalf RL. Dendritic cell-mediated phagocytosis but not immune activation is enhanced by plasmin. PloS one 2015; 10: e0131216.

Bromfield EG, McLaughlin EA, Aitken RJ, Nixon B. Heat Shock Protein member A2 forms a stable complex with angiotensin converting enzyme and protein disulfide isomerase A6 in human spermatozoa. Molecular human reproduction 2015: gav073.

Bromfield E, Aitken RJ, Nixon B. Novel characterization of the HSPA2-stabilizing protein BAG6 in human spermatozoa. Molecular human reproduction 2015; 21: 755-769.

Cardoso FC, Dekan Z, Rosengren KJ, Erickson A, Vetter I, Deuis JR, Herzig V, Alewood PF, King GF, Lewis RJ. Identification and characterization of ProTx-III [μ-TRTX-Tp1a], a new voltage-gated sodium channel inhibitor from venom of the tarantula Thrixopelma pruriens. Molecular pharmacology 2015; 88: 291-303.

Cheong CM, Chow AW, Fitter S, Hewett DR, Martin SK, Williams SA, To LB, Zannettino AC, Vandyke K. Tetraspanin 7 (TSPAN7) expression is upregulated in multiple myeloma patients and inhibits myeloma tumour development in vivo. Experimental cell research 2015; 332: 24-38.

Chi G, Rohde PR, Ridone P, Hankamer B, Martinac B, Landsberg MJ. Functional similarities between heterogeneously and homogenously expressed MscL constructs. European Biophysics Journal October 2015, Volume 44, Issue 7, pp 589-598

Cole AJ, Angell AR, de Nys R, Paul NA. Cyclical changes in biomass productivity and amino acid content of freshwater macroalgae following nitrogen manipulation. Algal Research 2015; 12: 477-486.

Cole AJ, de Nys R, Paul NA. Biorecovery of nutrient waste as protein in freshwater macroalgae. Algal Research 2015; 7: 58-65.

Cruickshank MN, Dods J, Taylor RL, Karimi M, Fenwick EJ, Quail EA, Rea AJ, Holers VM, Abraham LJ, Ulgiati D. Analysis of tandem E-box motifs within human Complement receptor 2 (CR2/CD21) promoter reveals cell specific roles for RP58, E2A, USF and localized chromatin accessibility. The international journal of biochemistry & cell biology 2015; 64: 107-119.

Cunningham J, Nguyen V, Adorno P, Droulez V. Nutrient Composition of Retail Samples of Australian Beef Sausages. Nutrients 2015; 7: 9602-9617.

Fernando N, Panozzo J, Tausz M, Norton R, Fitzgerald G, Khan A, Seneweera S. Rising CO 2 concentration altered wheat grain proteome and flour rheological characteristics. Food chemistry 2015; 170: 448-454.

Fletcher NL, Paquet N, Dickinson EL, Dexter AF. Bioproduction of highly charged designer peptide surfactants via a chemically cleavable coiled‐coil heteroconcatemer. Biotechnology and bioengineering 2015; 112: 242-251.

Gamble S, Pirozzi I, Hall MR, Zeng C, Conlan JA, Francis DS. The effects of pre-digested protein sources on the performance of early–mid stage Panulirus ornatus phyllosoma. Aquaculture 2015; 440: 17-24.

Gotsbacher MP, Karuso P. New antimicrobial bromotyrosine analogues from the sponge Pseudoceratina purpurea and its predator Tylodina corticalis. Marine drugs 2015; 13: 1389-1409.

Hossain MA, Islam AI, Iji P. The Availability or Retention of Micronutrient Contents in the Ilealdigesta of Broiler Chickens Raised on Plant Protein Diets with and Without Supplemental Enzymes. Global Journal of Animal Scientific Research 2015; 3: 423-434.

Hutchison AT, Piscitelli D, Horowitz M, Jones KL, Clifton PM, Standfield S, Hausken T, Feinle-Bisset C, Luscombe-Marsh ND. Acute load-dependent effects of oral whey protein on gastric emptying, gut hormone release, glycemia, appetite, and energy intake in healthy men. The American journal of clinical nutrition 2015; 102: 1574-1584.

Jin A-H, Israel MR, Inserra MC, Smith JJ, Lewis RJ, Alewood PF, Vetter I, Dutertre S. δ-conotoxin SuVIA suggests an evolutionary link between ancestral predator defence and the origin of fish-hunting behaviour in carnivorous cone snails. Proc. R. Soc. B, vol. 282. The Royal Society, 2015, p 20150817.

Klint JK, Smith JJ, Vetter I, Rupasinghe DB, Er SY, Senff S, Herzig V, Mobli M, Lewis RJ, Bosmans F. Seven novel modulators of the analgesic target NaV1. 7 uncovered using a high‐throughput venom‐based discovery approach. British journal of pharmacology 2015; 172: 2445-2458.

Krishnan S, Collett M, Robinson PJ. SH3 Domains Differentially Stimulate Distinct Dynamin I Assembly Modes and G Domain Activity. PloS one 2015; 10: e0144609.

Leong LEX, Denman SE, Hugenholtz P, McSweeney CS. Amino Acid and Peptide Utilization Profiles of the Fluoroacetate-Degrading Bacterium Synergistetes Strain MFA1 Under Varying Conditions. Physiology and Biotechnology Microbial Ecology pp 1-11First online: 26 June 2015

Lim CK, Essa MM, de Paula Martins R, Lovejoy DB, Bilgin AA, Waly MI, Al‐Farsi YM, Al‐Sharbati M, Al‐Shaffae MA, Guillemin GJ. Altered kynurenine pathway metabolism in autism: Implication for immune‐induced glutamatergic activity. Autism Research 2015.

Lisle J, Mertens-Walker I, Stephens C, Stansfield S, Clements J, Herington A, Stephenson S-A. Murine, but not human, ephrin-B2 can be efficiently cleaved by the serine protease kallikrein-4: Implications for xenograft models of human prostate cancer. Experimental cell research 2015; 333: 136-146.

Loke I, Packer NH and Thaysen-Andersen M. Complementary LC-MS/MS-Based N-Glycan, N-Glycopeptide, and Intact N-Glycoprotein Profiling Reveals Unconventional Asn71-Glycosylation of Human Neutrophil Cathepsin G. Biomolecules 2015, 5(3), 1832-1854; doi:10.3390/biom5031832

McCarroll JA, Gan PP, Erlich RB, Liu M, Dwarte T, Sagnella SS, Akerfeldt MC, Yang L, Parker AL, Chang MH. TUBB3/βIII-Tubulin Acts through the PTEN/AKT Signaling Axis to Promote Tumorigenesis and Anoikis Resistance in Non–Small Cell Lung Cancer. Cancer research 2015; 75: 415-425.

Neveux N, Magnusson M, Maschmeyer T, Nys R, Paul NA. Comparing the potential production and value of high‐energy liquid fuels and protein from marine and freshwater macroalgae. Gcb Bioenergy 2015; 7: 673-689.

Nguyen-Khuong T, Everest-Dass AV, Kautto L, Zhao Z, Willcox MD, Packer NH. Glycomic characterization of basal tears and changes with diabetes and diabetic retinopathy. Glycobiology 2015; 25: 269-283.

Raymond B, Jenkins C, Seymour LM, Tacchi JL, Widjaja M, Jarocki VM, Deutscher AT, Turnbull L, Whitchurch CB, Padula MP. Proteolytic processing of the cilium adhesin MHJ_0194 (P123J) in Mycoplasma hyopneumoniae generates a functionally diverse array of cleavage fragments that bind multiple host molecules. Cellular microbiology 2015; 17: 425-444.

Salampessy J, Reddy N, Kailasapathy K, Phillips M. Functional and potential therapeutic ACE-inhibitory peptides derived from bromelain hydrolysis of trevally proteins. Journal of functional foods 2015; 14: 716-725.

Sethi MK., Thaysen-Andersen M, Hoguen K, Park CK, Baker MS, Packer NH, Paik Y-K, Hancock WS, Fanayan S. Quantitative proteomic analysis of paired colorectal cancer and non-tumorigenic tissues reveals signature proteins and perturbed pathways involved in CRC progression and metastasis. Journal of Proteomics Volume 126, 3 August 2015, Pages 54–67

Sethi MK, Kim H, Park CK, Baker MS, Paik Y-K, Packer NH, Hancock WS, Fanayan S and Thaysen-Andersen M. In-depth N-glycome profiling of paired colorectal cancer and non-tumorigenic tissues reveals cancer-, stage- and EGFR-specific protein N-glycosylation.  Glycobiology (2015) 25 (10): 1064-1078.

Steinert RE, Landrock MF, Ullrich SS, Standfield S, Otto B, Horowitz M, Feinle-Bisset C. Effects of intraduodenal infusion of the branched-chain amino acid leucine on ad libitum eating, gut motor and hormone functions, and glycemia in healthy men. The American journal of clinical nutrition 2015; 102: 820-827.

Sutherland JM, Sobinoff AP, Fraser BA, Redgrove KA, Davidson T-L, Siddall NA, Koopman P, Hime GR, McLaughlin EA. RNA binding protein Musashi-1 directly targets Msi2 and Erh during early testis germ cell development and interacts with IPO5 upon translocation to the nucleus. The FASEB Journal 2015; 29: 2759-2768.

Tanner GJ, Blundell MJ, Colgrave ML, Howitt CA. Creation of the first ultra‐low gluten barley (Hordeum vulgare L.) for coeliac and gluten‐intolerant populations. Plant biotechnology journal 2015.

Walker AA, Weisman S, Trueman HE, Merritt DJ, Sutherland TD. The other prey-capture silk: Fibres made by glow-worms (Diptera: Keroplatidae) comprise cross-β-sheet crystallites in an abundant amorphous fraction. Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology 2015; 187: 78-84.

Widodo A, Nolan J, Iji P. The nutritional value of new varieties of high-yielding triticale: Nutrient composition and in vitro digestibility. South African Journal of Animal Science 2015; 45: 60-73.

Wilson C, Shalini S, Filipovska A, Richman T, Davies S, Martin S, McGee S, Puccini J, Nikolic A, Dorstyn L. Age-related proteostasis and metabolic alterations in Caspase-2-deficient mice. Cell death & disease 2015; 6: e1615.

Yau YY, Duo X, Leong RW, Wasinger VC. Reverse-polynomial dilution calibration methodology extends lower limit of quantification and reduces relative residual error in targeted Peptide measurements in blood plasma. Molecular & Cellular Proteomics 2015; 14: 441-454.

Zhu L, Shen W, Lyons B, Wang Y, Zhou F, Gillies MC. Dysregulation of inter‐photoreceptor retinoid‐binding protein (IRBP) after induced Müller cell disruption. Journal of neurochemistry 2015; 133: 909-918.


Angell AR, Mata L, de Nys R and Paul NA. Variation in amino acid content and its relationship to nitrogen content and growth rate in Ulva ohnoi (Chlorophyta). Journal of Phycology Volume 50, Issue 1, pages 216–226, February 2014

Au AE-L, Sashindranath M, Borg RJ, Kleifeld O, Andrews RK, Gardiner EE, Medcalf RL and Samson AL. Activated platelets rescue apoptotic cells via paracrine activation of EGFR and DNA-dependent protein kinase. Cell Death and Disease (2014) 5, e1410; doi:10.1038/cddis.2014.373

Balotra S, Newman J, French NG, Briggs LJ, Peat TS and Scott C. Crystallization and preliminary X-ray diffraction analysis of the amidase domain of allophanate hydrolase from Pseudomonas sp. strain ADP. Acta Cryst. (2014). F70, 310-315 doi:10.1107/S2053230X13034705

Banville N, Burgess JK, Jaffar J, Tjin G, Richeldi L, Cerri S, Persiani E, Black JL, Oliver BG. A Quantitative Proteomic Approach to Identify Significantly Altered Protein Networks in the Serum of Patients with Lymphangioleiomyomatosis (LAM) PLOS Published: August 18, 2014   DOI: 10.1371/journal.pone.0105365

Blakeway LV, Power PM, Jen FE-C, Worboys SR, Boitano M, Clark TA, Korlach J, Bakaletz LO, Jennings MP, Peak IR and Seib KL. ModM DNA methyltransferase methylome analysis reveals a potential role for Moraxella catarrhalis phasevarions in otitis media.  December 2014 The FASEB Journal vol. 28 no. 12 5197-5207

Church JS, Woodhead AL, Walker AA and Sutherland TD. A comparison of convergently evolved insect silks that share ß-sheet molecular structure. Biopolymers Volume 101, Issue 6, pages 630–639, June 2014

Emebiri LC. Genetic variation and possible SNP markers for breeding wheat with low-grain asparagine, the major precursor for acrylamide formation in heat-processed products. Journal of the Science of Food and Agriculture Volume 94, Issue 7 May 2014 Pages 1422–1429

Gran P, Larsen AE, Bonham M, Dordevic AL, Rupasinghe T, Nahid CSA, Tull D, Sinclair AJ, Mitchell CJ and Cameron-Smith D. Interfaced to a tandem quadrupole detector. All samples were analysed using Agilent Masshunter Quantitative Analysis software, version B ... using Restore  Western Blot Stripping buffer™.  Nutrition & Metabolism 2014, 11:46  doi:10.1186/1743-7075-11-46

Ho S, Woodford K, Kukuljan S and Pal S. Comparative effects of A1 versus A2 beta-casein on gastrointestinal measures: a blinded randomised cross-over pilot study. European Journal of Clinical Nutrition (2014) 68, 994–1000

Hossain MA, Islam AF and Iji PA. Impact of Microbial Enzymes on Growth Performance, Micronutrient Digestibility, Tissue Protein Contents and Endogenous Enzyme Activities of Broiler Chickens Fed on Vegetable Protein Diets. International Journal of Poultry Science Volume 13, Number 10, 555-561, 2014

Humphries JM, Pennoa MAS, Weiland F, Klingler-Hoffmann M, Zuber A, Boussioutas A, Ernst M, Hoffmann P. Identification and validation of novel candidate protein biomarkers for the detection of human gastric cancer. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics Volume 1844, Issue 5, May 2014, Pages 1051–1058

Jones AL, Mowry BJ, McLean DE, Mantzioris BX, Penderd MP, Greer JM. Elevated levels of autoantibodies targeting the M1 muscarinic acetylcholine receptor and neurofilament medium in sera from subgroups of patients with schizophrenia. Journal of Neuroimmunology Volume 269, Issues 1–2, 15 April 2014, Pages 68–75

Masoudi S, Zhong L, Raftery MJ, Stapleton FJ, Willcox MD. Method Development for Quantification of Five Tear Proteins Using Selected Reaction Monitoring (SRM) Mass Spectrometry.  Investigative Ophthalmology & Visual Science February 2014, Vol.55, 767-775.

Mata L, Magnusson M, Paul NA, de Nys R. The intensive land-based production of the green seaweeds Derbesia tenuissima and Ulva ohnoi: biomass and bioproducts. Journal of Applied Phycology doi:10.?1007/?s10811-015-0561-1 pp 1-11

Nixon B, Ewen KA, Krivanek KM, Clulow J, Kidd G, Ecroyd H and Jones RC. Post-testicular sperm maturation and identification of an epididymal protein in the Japanese quail (Coturnix coturnix japonica). Reproduction March 1, 2014 147 265-277

O’Doherty PJ, Lyons V, Tun NM, Rogers PJ, Bailey TD & Wu MJ. Transcriptomic and biochemical evidence for the role of lysine biosynthesis against linoleic acid hydroperoxide-induced stress in Saccharomyces cerevisiae. Free Radical Research Volume 48, Issue 12, 2014

Peng YY, Stoichevska V, Madsen S, Howell L, Dumsday GJ, Werkmeister JA, Ramshaw JAM. A simple cost-effective methodology for large-scale purification of recombinant non-animal collagens. Applied Microbiology and Biotechnology February 2014, Volume 98, Issue 4, pp 1807-1815

Solon-Biet SM, McMahon AC, Ballard JWO, Ruohonen K, Wu LE, Cogger VC, Warren A, Huang X, Pichaud N, Melvin RG, Gokarn R, Khalil M, Turner N, Cooney GJ, Sinclair DA, Raubenheimer D, Le Couteur DG, Simpson SJ. The Ratio of Macronutrients, Not Caloric Intake, Dictates Cardiometabolic Health, Aging, and Longevity in Ad Libitum-Fed Mice Cell Metabolism Volume 19, Issue 3, 4 March 2014, Pages 418–430

Rouf R, Stephens AS, Spaan L, Arndt NX, Day CJ, May TW, Tiralongo E, Tiralongo J. G2/M cell cycle arrest by an N-acetyl-D-glucosamine specific lectin from Psathyrella asperospora. Glycoconjugate Journal January 2014, Volume 31, Issue 1, pp 61-70

Siripornadulsil S, Thanwisai L, Siripornadulsil W. Changes in the proteome of the cadmium-tolerant bacteria Cupriavidus taiwanensis KKU2500-3 in response to cadmium toxicity. Canadian Journal of Microbiology, 2014, 60(3): 121-131, 10.1139/cjm-2013-0713

Ulrich D, Edwards SL, Su K, White JF, Ramshaw JAM, Jenkin G, Deprest J, Rosamilia A, Werkmeister JA, Gargett CE. Influence of Reproductive Status on Tissue Composition and Biomechanical Properties of Ovine Vagina. PLOS Published: April 7, 2014 DOI: 10.1371/journal.pone.0093172

Ulrich D, Edwards SL, Letouzey V, Su K, White JF, Rosamilia A, Gargett CE, Werkmeister JA. Regional Variation in Tissue Composition and Biomechanical Properties of Postmenopausal Ovine and Human Vagina. PLOS Published: August 22, 2014 DOI: 10.1371/journal.pone.0104972

Vongsvivut J, Heraud P, Zhang W, Kralovec JA, McNaughton D, Barrow CJ. Rapid Determination of Protein Contents in Microencapsulated Fish Oil Supplements by ATR-FTIR Spectroscopy and Partial Least Square Regression (PLSR) Analysis. Food and Bioprocess Technology January 2014, Volume 7, Issue 1, pp 265-277

Williams KL, Gooley AA, Wilkins MR, Packer NH. A Sydney Proteome Story. Journal of Proteomics Volume 107, 31 July 2014, Pages 13–23


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Chung L, Shibli S, Moore K, Elder EE, Boyle FM, Marsh DJ and Baxter RC. Tissue biomarkers of breast cancer and their association with conventional pathologic features.British Journal of Cancer (2013) 108, 351–360

Dheilly NM, Raftos DA, Haynes PA, Smith LC, Nair SV. Shotgun proteomics of coelomic fluid from the purple sea urchin, Strongylocentrotus purpuratus. Developmental & Comparative Immunology 2013; 40: 35-50.

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Hardy MC, Daly NL, Mobli M, Morales RA, King GF. Isolation of an orally active insecticidal toxin from the venom of an Australian tarantula. PLoS one 2013; 8: e73136.

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Jung M, Lord MS, Cheng B, Lyons JG, Alkhouri H, Hughes JM, McCarthy SJ, Iozzo RV, Whitelock JM. Mast cells produce novel shorter forms of perlecan that contain functional endorepellin a role in angiogenesis and wound healing. Journal of Biological Chemistry 2013; 288: 3289-3304.

Leymarie N, Griffin PJ, Jonscher K, Kolarich D, Orlando R, McComb M, Zaia J, Aguilan J, Alley WR, Altmann F. Interlaboratory study on differential analysis of protein glycosylation by mass spectrometry: the ABRF glycoprotein research multi-institutional study 2012. Molecular & Cellular Proteomics 2013; 12: 2935-2951.

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Spencer JR, Darbyshire KM, Boucher AA, Kashem MA, Long LE, McGregor IS, Karl T, Arnold JC. Novel molecular changes induced by Nrg1 hypomorphism and Nrg1-cannabinoid interaction in adolescence: a hippocampal proteomic study in mice. Frontiers in Cellular Neuroscience 2013; 7: 15.

Stavenhagen K, Hinneburg H, Thaysen‐Andersen M, Hartmann L, Silva DV, Fuchser J, Kaspar S, Rapp E, Seeberger PH, Kolarich D. Quantitative mapping of glycoprotein micro‐heterogeneity and macro‐heterogeneity: an evaluation of mass spectrometry signal strengths using synthetic peptides and glycopeptides. Journal of Mass Spectrometry 2013; 48: 627-639.

Sutherland TD, Peng YY, Trueman HE, Weisman S, Okada S, Walker AA, Sriskantha A, White JF, Huson MG, Werkmeister JA. A new class of animal collagen masquerading as an insect silk. Scientific Reports 2013; 3: 2864.

Viviers MZ, Smith ME, Wilkes E, Smith P. Effects of five metals on the evolution of hydrogen sulfide, methanethiol, and dimethyl sulfide during anaerobic storage of Chardonnay and Shiraz wines. Journal of Agricultural and Food Chemistry 2013; 61: 12385-12396.

Viviers MZ, Smith ME, Wilkes E, Smith P. Effects of five metals on the evolution of hydrogen sulfide, methanethiol, and dimethyl sulfide during anaerobic storage of Chardonnay and Shiraz wines. Journal of Agricultural and Food Chemistry 2013; 61: 12385-12396.

Walker AA, Church JS, Woodhead AL, Sutherland TD. Silverfish silk is formed by entanglement of randomly coiled protein chains. Insect Biochemistry and Molecular Biology 2013; 43: 572-579.

Watkins H, Au M, Bobby R, Archbold J, Abdul‐Manan N, Moore J, Middleditch M, Williams G, Brimble M, Dingley A. Identification of key residues involved in adrenomedullin binding to the AM1 receptor. British Journal of Pharmacology 2013; 169: 143-155.

Wong ESW, Hardy MC, Wood D, Bailey T, King GF. SVM-Based Prediction of Propeptide Cleavage Sites in Spider Toxins Identifies Toxin Innovation in an Australian Tarantula. PLOS July 22, 2013 DOI: 10.1371/journal.pone.0066279

Zeng B, Chuan Y, O'Sullivan B, Caminschi I, Lahoud M, Thomas R, Middelberg A. Receptor‐Specific Delivery of Protein Antigen to Dendritic Cells by a Nanoemulsion Formed Using Top‐Down Non‐Covalent Click Self‐Assembly. Small 2013; 9: 3736-3742.

Zhao C-X, Middelberg AP. Stimuli-Responsive Peptide Nanostructures at the Fluid–Fluid Interface. Protein Nanotechnology: Protocols, Instrumentation, and Applications, Second Edition 2013: 179-194.

Zhou XY, Gao JL, Hunter N, Potempa J, Nguyen KA. Sequence‐independent processing site of the C‐terminal domain (CTD) influences maturation of the RgpB protease from Porphyromonas gingivalis. Molecular Microbiology 2013; 89: 903-917.

Zhu L, Shen W, Zhu M, Coorey NJ, Nguyen AP, Barthelmes D, Gillies MC. Anti-Retinal Antibodies in Patients With Macular Telangiectasia Type 2Anti-Retinal Antibodies in Patients With MacTel-2. Investigative Ophthalmology & Visual Science 2013; 54: 5675-5683.


Butardo Jr VM, Daygon VD, Colgrave ML, Campbell PM, Resurreccion A, Cuevas RP, Jobling SA, Tetlow I, Rahman S, Morell M. Biomolecular analyses of starch and starch granule proteins in the high-amylose rice mutant Goami 2. Journal of Agricultural and Food Chemistry 2012; 60: 11576-11585.

Chen X, Wilde KL, Wang H, Lake V, Holden PJ, Middelberg AP, He L, Duff AP. High yield expression and efficient purification of deuterated human protein galectin-2. Food and Bioproducts Processing 2012; 90: 563-572.

Chuan YP, Zeng BY, O’Sullivan B, Thomas R, Middelberg AP. Co-delivery of antigen and a lipophilic anti-inflammatory drug to cells via a tailorable nanocarrier emulsion. Journal of Colloid and Interface Science 2012; 368: 616-624.

Conlan BF, Colgrave ML, Gillon AD, Guarino R, Craik DJ, Anderson MA. Insights into processing and cyclization events associated with biosynthesis of the cyclic Peptide kalata B1. Journal of Biological Chemistry 2012; 287: 28037-28046.

Dheilly NM, Haynes PA, Raftos DA, Nair SV. Time course proteomic profiling of cellular responses to immunological challenge in the sea urchin, Heliocidaris erythrogramma. Developmental & Comparative Immunology 2012; 37: 243-256.

Dimitrijev-Dwyer M, He L, James M, Nelson A, Wang L, Middelberg AP. The effects of acid hydrolysis on protein biosurfactant molecular, interfacial, and foam properties: pH responsive protein hydrolysates. Soft Matter 2012; 8: 5131-5139.

Edwards JM, Roberts TH, Atwell BJ. Quantifying ATP turnover in anoxic coleoptiles of rice (Oryza sativa) demonstrates preferential allocation of energy to protein synthesis. Journal of Experimental Botany 2012; 63: 4389-4402.

Gajbhiye R, Sonawani A, Khan S, Suryawanshi A, Kadam S, Warty N, Raut V, Khole V. Identification and validation of novel serum markers for early diagnosis of endometriosis. Human Reproduction 2012; 27: 408-417.

Gu BJ, Duce JA, Valova VA, Wong B, Bush AI, Petrou S, Wiley JS. P2X7 receptor-mediated scavenger activity of mononuclear phagocytes toward non-opsonized particles and apoptotic cells is inhibited by serum glycoproteins but remains active in cerebrospinal fluid. Journal of Biological Chemistry 2012; 287: 17318-17330.

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Jensen JE, Mobli M, Brust A, Alewood PF, King GF, Rash LD. Cyclisation increases the stability of the sea anemone peptide APETx2 but decreases its activity at acid-sensing ion channel 3. Marine Drugs 2012; 10: 1511-1527.

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Lawson T, Connally R, Vemulpad S, Piper J. Dimethyl formamide‐free, urea‐NaCl fluorescence in situ hybridization assay for Staphylococcus aureus. Letters in Applied Microbiology 2012; 54: 263-266.

Liew MW, Chuan YP, Middelberg AP. Reactive diafiltration for assembly and formulation of virus-like particles. Biochemical Engineering Journal 2012; 68: 120-128.

Liew MW, Chuan YP, Middelberg AP. High-yield and scalable cell-free assembly of virus-like particles by dilution. Biochemical Engineering Journal 2012; 67: 88-96.

Lim CK, Hassan KA, Tetu SG, Loper JE, Paulsen IT. The effect of iron limitation on the transcriptome and proteome of Pseudomonas fluorescens Pf-5. PLoS One 2012; 7: e39139.

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Omali NB, Zhao Z, Zhong L, Raftery MJ, Zhu H, Ozkan J, Willcox M. Quantification of protein deposits on silicone hydrogel materials using stable-isotopic labeling and multiple reaction monitoring. Biofouling 2012; 28: 697-709.

Petrovski S, Tillett D, Seviour RJ. Genome sequences and characterization of the related Gordonia phages GTE5 and GRU1 and their use as potential biocontrol agents. Applied and Environmental Microbiology 2012; 78: 42-47.

Robinson MW, Alvarado R, To J, Hutchinson AT, Dowdell SN, Lund M, Turnbull L, Whitchurch CB, O'Brien BA, Dalton JP. A helminth cathelicidin-like protein suppresses antigen processing and presentation in macrophages via inhibition of lysosomal vATPase. The FASEB Journal 2012; 26: 4614-4627.

Summers FA, Quigley AF, Hawkins CL. Identification of proteins susceptible to thiol oxidation in endothelial cells exposed to hypochlorous acid and N-chloramines. Biochemical and Biophysical Research Communications 2012; 425: 157-161.

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Zhou S, Sawicki A, Willows RD, Luo M. C‐terminal residues of Oryza sativa GUN4 are required for the activation of the ChlH subunit of magnesium chelatase in chlorophyll synthesis. FEBS letters 2012; 586: 205-210.

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