SWATHXtend
SWATHXtend
SWATHXtend - APAF developed software to extend peptide assay libraries for SWATH mass spectrometry analysis.Use this to merge a local IDA data with spectral libraries from external sources such as large repositories. The script can be downloaded from BioConductor and can be found at this link.
Read the article
Wu et al. SWATH mass spectrometry performance using extended peptide MS/MS assay libraries. Mol. Cell Proteomics mcp.M115.055558. First published online on May 9, 2016