Publications 2016

Publications 2016

Breen EJ. Sample Replication Effects on Statistical Power in Multiplexed Immunoassay Analysis. MOJ Proteomics Bioinform 2016, 4(3): 00121.

Selle PH, Truong HH, McQuade LR, Moss AF, Liu SY. Reducing agent and exogenous protease additions, individually and in combination, to wheat- and sorghum-based diets interactively influence parameters of nutrient utilisation and digestive dynamics in broiler chickens. Animal Nutrition, Volume 2, Issue 4, December 2016, Pages 303-311.

Morris KM, O'Meally D, Zaw T, Song X, Gillett A, Molloy MP, Polkinghorne A, Belov K. Characterisation of the immune compounds in koala milk using a combined transcriptomic and proteomic approach. Sci Rep. 2016 Oct 7;6:35011.

Pascovici D, Handler DC, Wu JX, Haynes PA. Multiple testing corrections in quantitative proteomics: A useful but blunt tool. Proteomics. 2016 Sep;16(18):2448-53.

Al-Eisawi Z, Beale P, Chan C, Yu JQ, Proschogo N, Molloy M, Huq F. .Changes in the in vitro activity of platinum drugs when administered in two aliquots. BMC Cancer. 2016 Aug 26; 16:688.

Mirzaei M, Wu Y, Handler D, Maher T, Pascovici D, Ravishankar P. (Ed.) in Applications of Quantitative Proteomics in Plant Research, Agricultural Proteomics Volume 1, 1-29, Springer International Publishing.

Mahboob S, Ahn SB, Mohamedali A, Amirkhani A, Tan S-H, Ranganathan S, Nice E and Baker MS. Addition of protease inhibitors to EDTA containing blood collection tubes does not deliver significant advantage for preservation of plasma for down-stream analysis. Clin Proteom Bioinform, 2016, Volume 1(3): 1-9.

Song X, Amirkhani A, Wu JX, Pascovici D, Zaw T, Xavier D, Clarke SJ, Molloy MP. Analytical performance of nanoLC-SRM using non-depleted human plasma over an 18-month period. Proteomics.2016 Aug;16(15-16):2118-27

Wu JX, Song X, Pascovici D, Zaw T, Care N, Krisp C, Molloy MP. SWATH mass spectrometry performance using extended peptide MS/MS assay libraries. Mol. Cell. Proteomics. 2016 Jul;15(7):2501-14.

Hayes SA, Haefliger S, Harris B, Pavlakis N, Clarke SJ, Molloy MP, Howell VM. Exhaled breath condensate for lung cancer protein analysis: a review of methods and biomarkers. J. Breath Res. 2016 Jul 5;10(3):034001.

Kamath KS, Pascovici D, Penesyan A, Goel A, Venkatakrishnan V, Paulsen IT, Packer NH, Molloy MP. Pseudomonas aeruginosa cell membrane protein expression from phenotypically diverse cystic fibrosis isolates demonstrate host specific adaptations. J Proteome Res. 2016 Jul 1;15(7):2152-63.

Wu Y, Mirzaei M, Pascovici D, Chick JM, Atwell BJ, Haynes PA. Quantitative proteomic analysis of two different rice varieties reveals that drought tolerance is correlated with reduced abundance of photosynthetic machinery and increased abundance of ClpD1 protease. J Proteomics. 2016 Jun 30;143:73-82.

Truong HH, Neilson KA, McInerney BV, Khoddami A, Roberts TH, Cadogan DJ, Liu SY and Selle PH. Comparative performance of broiler chickens offered nutritionally equivalent diets based on six diverse, ‘tanninfree’ sorghum varieties with quantified concentrations of phenolic compounds, kafirin, and phytate. Animal Production Science Submitted: 8 February 2016 Accepted: 9 February 2016 Published online: 1 June 2016

Breen EJ Tan W, and Khan A. The Statistical Value of Raw Fluorescence Signal in Luminex xMAP Based Multiplex Immunoassays. Scientific Reports, 2016 May 31;6:26996.

Williams KL, Topp S, Yang S, Smith B, Fifita JA, Warraich ST, Zhang KY, Farrawell N, Vance C, Hu X, Chesi A, Leblond CS, Lee A, Rayner SL, Sundaramoorthy V, Dobson-Stone C, Molloy MP, Van Blitterswijk M, Dickson DW, Petersen RC, Graff-Radford NR, Boeve BF, Murray ME, Pottier C, Don E, Winnick C, McCann EP, Hogan A, Daoud H, Levert A, Dion PA, Mitsui J, Ishiura H, Takahashi Y, Goto J, Kost J, Gellera C, Gkazi AS, Miller J, Stockton J, Brooks WS, Boundy K, Polak M, Muñoz-Blanco JL, Esteban-Pérez J, Rábano A, Hardiman O, Morrison KE, Ticozzi N, Silani V, De Belleroche J, Glass JD, Kwok JBJ, Guillemin GJ, Chung RS, Tsuji S, Brown RH Jr, García-Redondo A, Rademakers R, Landers JE, Gitler AD, Rouleau GA, Cole NJ, Yerbury JJ, Atkin JD, Shaw CE, Nicholson GA, Blair IP. CCNF mutations in amyotrophic lateral sclerosis and frontotemporal dementia. Nat Comm, Volume 7, 15 April 2016, Article number 11253.

Liu C, Song X, Nisbet R, and Götz J. Co-immunoprecipitation with tau isoform-specific antibodies reveals distinct protein interactions, and highlights a putative role for 2N tau in disease. The Journal of Biological Chemistry. 2016 Apr 8;291(15):8173-88

Martinez-Aguilar J, Clifton-Bligh R, Molloy MP. Proteomics of thyroid tumours provides new insights into their molecular composition and changes associated with malignancy. Scientific Reports, 2016 Mar 30;6:23660.

Kao SC, Kirschner, MB, Cooper, WA, Tran T, Burgers S, Wright C, Korse T, van den Broek D, Edelman J, Vallely M, McCaughan B, Pavlakis N, Clarke S, Molloy MP, van Zandwijk N, Reid G. A proteomics-based approach identifies secreted protein acidic and rich in cysteine (SPARC) as a prognostic biomarker in malignant pleural mesothelioma. Br. J. Cancer 2016, Mar 1;114(5):524-31.

Eaton TR, Potter A, Billaut F, Panchuk D, Pyne DB, Gore CJ, Chen TT, McQuade L, Stepto NK. A Combination of Amino Acids and Caffeine Enhances Sprint Running Capacity in a Hot, Hypoxic Environment. Int J Sport Nutr Exerc Metab. 2016 Feb;26(1):33-45.

Succar P, Medynskyj M, Breen EJ, Batterham T, Molloy MP and Herbert BR. Priming Adipose-Derived Mesenchymal Stem Cells with Hyaluronan Alters Growth Kinetics and Increases Attachment to Articular Cartilage. Stem Cells International Volume 2016, Article ID 9364213, 13 pages

D’Agostino PMD, Song X, Neilan BA, Moffitt MC. Proteogenomics of a saxitoxin-producing and non-toxic strain of Anabaena circinalis (cyanobacteria) in response to extracellular NaCl and phosphate depletion. Environ Microbiol. 2016 Feb;18(2):461-76.

Jamieson C, Mills KM, Lui C, Semaan C, Molloy MP, Sharma M, Forwood JK, Henderson BR. Characterization of a beta-catenin nuclear localization defect in MCF-7 breast cancer cells. Exp Cell Res.2016 Feb 15;341(2):196-206.

Emery SJ, Mirzaei M, Vuong D, Pascovici D, Chick JM, Lacey E, Haynes PA. Induction of virulence factors in Giardia duodenalis independent of host attachment. Sci Rep. 2016 Feb 12;6:20765.

Liu F, Koval M, Ranganathan S, Fanayan S, Hancock WS, Lundberg EK, Beavis RC, Lane L, Duek P, McQuade L, Kelleher NL, Baker MS. Systems Proteomics View of the Endogenous Human Claudin Protein Family. J Proteome Res. 2016 Feb 5;15(2):339-59.

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